PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14742
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 479aa    MW: 53178.4 Da    PI: 9.2252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14742genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-056383323
                               ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                               C+ Cgk F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA14742 63 CETCGKGFQRDQNLQLHRRGH 83
                               *******************88 PP

2zf-C2H213.50.00022137159123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k++  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA14742 137 WKCEKCSKRYAVQSDWKAHSKTC 159
                                58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-66083No hitNo description
Gene3DG3DSA:3.30.160.608.5E-56183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5936183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-6132157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLKKMDEVEI TNGNNFPQNP TTSASNNPPT LKRKRNLPGN PDPEAEVIAL SPKTLMATNR  60
FLCETCGKGF QRDQNLQLHR RGHNLPWKLK QRTNKEIKKR VYVCPEKSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGT IFSRRDSFIT  180
HRAFCDALAE ETARVSAASE INNSLLRGNI GNYNIMGTTT SLIPTNNMSN HFSSIFKPIA  240
TPPPDHHHHE SINQTRGLSL WMNQNQTSHE TMVTTNGNSN LHEIHQQQQQ HDTSSRGLIY  300
DNPNSNNYQL NWVFGNKFSS NCNQKLITST TTSLPLGNIN VNIKDVTSQQ ISSPLYSSQH  360
QIQSHQTSSA NMSATALLQK AAQIGSASSD TSFLGSLGLK CSNNNNIGGN SGMHGTTSSL  420
LISLANEEDH NTACDFTQMQ PSKRRHVQSD ENGGGHTRDF LGVGVQTICH PSSINGWI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572659.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9FFH31e-149IDD8_ARATH; Zinc finger protein NUTCRACKER
SwissprotQ9ZWA61e-149IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLI1LS810.0I1LS81_SOYBN; Uncharacterized protein
STRINGGLYMA12G13810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-146C2H2 family protein